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1

Genome-wide transcriptome dissection of the rice root system: implications for developmental and physiological functions

Hinako Takehisa, Yutaka Sato, Motoko Igarashi, Tomomi Abiko, Baltazar A. Antonio, Kaori Kamatsuki, Hiroshi Minami, Nobukazu Namiki, Yoshiaki Inukai, Mikio Nakazono, Yoshiaki Nagamura

Journal:

The Plant Journal

Year:

2012

Language:

english

File:

PDF, 1.54 MB

english, 2012

2

Identification of genes expressed in maize root cortical cells during lysigenous aerenchyma formation using laser microdissection and microarray analyses

Imene Rajhi, Takaki Yamauchi, Hirokazu Takahashi, Shunsaku Nishiuchi, Katsuhiro Shiono, Ryosuke Watanabe, Ahmed Mliki, Yoshiaki Nagamura, Nobuhiro Tsutsumi, Naoko K. Nishizawa, Mikio Nakazono

Journal:

New Phytologist

Year:

2011

Language:

english

File:

PDF, 1.17 MB

english, 2011

3

Laser microdissection-based tissue specific transcriptome analyses reveals novel regulatory network of genes involved in heat-induced grain chalk in rice endosperm

Ishimaru, Tsutomu, Parween, Sabiha, Saito, Yuhi, Shigemitsu, Takanari, Yamakawa, Hiromoto, Nakazono, Mikio, Masumura, Takehiro, Nishizawa, Naoko K, Kondo, Motohiko, Sreenivasulu, Nese

Journal:

Plant and Cell Physiology

Year:

2018

Language:

english

File:

PDF, 37.93 MB

english, 2018

4

Laser-Capture Microdissection, a Tool for the Global Analysis of Gene Expression in Specific Plant Cell Types: Identification of Genes Expressed Differentially in Epidermal Cells or Vascular Tissues of Maize

Mikio Nakazono, Fang Qiu, Lisa A. Borsuk and Patrick S. Schnable

Journal:

Year:

2003

Language:

english

File:

PDF, 2.24 MB

english, 2003

5

Enhanced formation of aerenchyma and induction of a barrier to radial oxygen loss in adventitious roots of Zea nicaraguensis contribute to its waterlogging tolerance as compared with maize (Zea mays ssp. mays)

TOMOMI ABIKO, LUKASZ KOTULA, KATSUHIRO SHIONO, AL IMRAN MALIK, TIMOTHY DAVID COLMER, MIKIO NAKAZONO

Journal:

Plant, Cell & Environment

Year:

2012

Language:

english

File:

PDF, 3.53 MB

english, 2012

6

Role of ethylene in acclimations to promote oxygen transport in roots of plants in waterlogged soils

Katsuhiro Shiono, Hirokazu Takahashi, Timothy D. Colmer, Mikio Nakazono

Journal:

Year:

2008

Language:

english

File:

PDF, 535 KB

english, 2008

7

Isolation of MaDEF from Muscari armeniacum and analysis of its expression using laser microdissection

Mutsumi Nakada, Megumi Komatsu, Toshinori Ochiai, Kazuhiro Ohtsu, Mikio Nakazono, Naoko K. Nishizawa, Ko Nitta, Ryutaro Nishiyama, Toshiaki Kameya, Akira Kanno

Journal:

Year:

2006

Language:

english

File:

PDF, 531 KB

english, 2006

8

On-Site Lateral Loading Test of a Traditional Timber House in Japan

Fujita, Kaori, Kondo, Tetsu, Koshihara, Mikio, Iwata, Shinji, Nakazono, Mahito, Sakamoto, Isao

Journal:

Journal of Asian Architecture and Building Engineering

Year:

2004

Language:

english

File:

PDF, 1.24 MB

english, 2004

9

Supranormal orientation selectivity of visual neurons in orientation-restricted animals

Sasaki, Kota S., Kimura, Rui, Ninomiya, Taihei, Tabuchi, Yuka, Tanaka, Hiroki, Fukui, Masayuki, Asada, Yusuke C., Arai, Toshiya, Inagaki, Mikio, Nakazono, Takayuki, Baba, Mika, Kato, Daisuke, Nishimot

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 3.84 MB

english, 2015

10

A transposon-induced spontaneous mutation results in low β-amylase content in rice

Hiroaki Saika, Mikio Nakazono, Akira Ikeda, Junji Yamaguchi, Shunpei Masaki, Motoki Kanekatsu, Keisuke Nemoto

Journal:

Year:

2005

Language:

english

File:

PDF, 191 KB

english, 2005

11

The CRTA motif is present in the promoters of mitochondrial genes of rice

Mikio Nakazono, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Year:

1995

Language:

english

File:

PDF, 843 KB

english, 1995

12

Transcriptome Analysis of Giant Pear Fruit with Fruit-specific DNA Reduplication on a Mutant Branch

Nashima, Kenji, Takahashi, Hirokazu, Nakazono, Mikio, Shimizu, Tokurou, Nishitani, Chikako, Yamamoto, Toshiya, Itai, Akihiro, Isuzugawa, Kanji, Hanada, Toshio, Takashina, Tadashi, Kato, Mari, Matsumot

Journal:

Journal of the Japanese Society for Horticultural Science

Year:

2013

Language:

english

File:

PDF, 1.01 MB

english, 2013

13

Arabidopsisdynamin-related protein DRP2B is co-localized with DRP1A on the leading edge of the forming cell plate

Masaru Fujimoto, Shin-ichi Arimura, Mikio Nakazono, Nobuhiro Tsutsumi

Journal:

Plant Cell Reports

Year:

2008

Language:

english

File:

PDF, 322 KB

english, 2008

14

Molecular evidence for phytosiderophore-induced improvement of iron nutrition of peanut intercropped with maize in calcareous soil

XIONG, HONGCHUN, KAKEI, YUSUKE, KOBAYASHI, TAKANORI, GUO, XIAOTONG, NAKAZONO, MIKIO, TAKAHASHI, HIROKAZU, NAKANISHI, HIROMI, SHEN, HONGYUN, ZHANG, FUSUO, NISHIZAWA, NAOKO K., ZUO, YUANMEI

Journal:

Plant, Cell & Environment

Year:

2013

Language:

english

File:

PDF, 931 KB

english, 2013

15

Fusion of mitochondria in tobacco suspension cultured cells is dependent on the cellular ATP level but not on actin polymerization

Kairo Wakamatsu, Masaru Fujimoto, Mikio Nakazono, Shin-ichi Arimura, Nobuhiro Tsutsumi

Journal:

Plant Cell Reports

Year:

2010

Language:

english

File:

PDF, 540 KB

english, 2010

16

Lysigenous aerenchyma formation in maize root is confined to cortical cells by regulation of genes related to generation and scavenging of reactive oxygen species

Yamauchi, Takaki, Rajhi, Imene, Nakazono, Mikio

Journal:

Plant Signaling & Behavior

Year:

2011

Language:

english

File:

PDF, 617 KB

english, 2011

17

A Point Mutation of Adh1 Gene is Involved in the Repression of Coleoptile Elongation under Submergence in Rice

Saika, Hiroaki, Matsumura, Hideo, Takano, Tetsuo, Tsutsumi, Nobuhiro, Nakazono, Mikio

Journal:

Breeding Science

Year:

2006

Language:

english

File:

PDF, 278 KB

english, 2006

18

Characterization and expression of the genes for cytochrome c oxidase subunit VIb (COX6b) from rice and Arabidopsis thaliana

Kazuhiro Ohtsu, Mikio Nakazono, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Year:

2001

Language:

english

File:

PDF, 393 KB

english, 2001

19

AOX1c, a novel rice gene for alternative oxidase; comparison with rice AOX1a and AOX1b

Saika, Hiroaki, Ohtsu, Kazuhiro, Hamanaka, Sawako, Nakazono, Mikio, Tsutsumi, Nobuhiro, Hirai, Atsushi

Journal:

Genes & Genetic Systems

Year:

2002

Language:

english

File:

PDF, 1.45 MB

english, 2002

20

Molecular bases for phyllomorph development in a one-leaf plant, Monophyllaea glabra

Ishikawa, Naoko, Takahashi, Hirokazu, Nakazono, Mikio, Tsukaya, Hirokazu

Journal:

American Journal of Botany

Year:

2017

Language:

english

File:

PDF, 1.20 MB

english, 2017

21

METALLOTHIONEIN genes encoding ROS scavenging enzymes are down-regulated in the root cortex during inducible aerenchyma formation in rice

Yamauchi, Takaki, Fukazawa, Aya, Nakazono, Mikio

Journal:

Plant Signaling & Behavior

Year:

2017

Language:

english

File:

PDF, 1.41 MB

english, 2017

22

Mechanisms of morphological adaptation of roots to waterlogging in gramineous plants

Yamauchi, Takaki, Nakazono, Mikio

Journal:

Year:

2015

Language:

english

File:

PDF, 5.74 MB

english, 2015

23

Formation of grain chalkiness and changes in water distribution in developing rice caryopses grown under high-temperature stress

Tsutomu Ishimaru, Akemi K. Horigane, Masashi Ida, Norio Iwasawa, Yumiko A. San-oh, Mikio Nakazono, Naoko K. Nishizawa, Takehiro Masumura, Motohiko Kondo, Mitsuru Yoshida

Journal:

Journal of Cereal Science

Year:

2009

Language:

english

File:

PDF, 708 KB

english, 2009

24

Laser microdissection-based gene expression analysis in the aleurone layer and starchy endosperm of developing rice caryopses in the early storage phase

Ishimaru, Tsutomu, Ida, Masashi, Hirose, Sakiko, Shimamura, Satoshi, Masumura, Takehiro, Nishizawa, Naoko K., Nakazono, Mikio, Kondo, Motohiko

Journal:

Year:

2015

Language:

english

File:

PDF, 3.32 MB

english, 2015

25

Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death

Yan, Haifang, Saika, Hiroaki, Maekawa, Masahiko, Takamure, Itsuro, Tsutsumi, Nobuhiro, Kyozuka, Junko, Nakazono, Mikio

Journal:

Genes & Genetic Systems

Year:

2007

Language:

english

File:

PDF, 719 KB

english, 2007

26

Apple phloem cells contain some mRNAs transported over long distances

Azumi Kanehira, Kaori Yamada, Tomomi Iwaya, Ryo Tsuwamoto, Atsushi Kasai, Mikio Nakazono, Takeo Harada

Journal:

Tree Genetics & Genomes

Year:

2010

Language:

english

File:

PDF, 519 KB

english, 2010

27

Transcript levels of the nuclear-encoded respiratory genes in rice decrease by oxygen deprivation: evidence for involvement of calcium in expression of the alternative oxidase 1a gene

Hiroyuki Tsuji, Mikio Nakazono, Daisuke Saisho, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Year:

2000

Language:

english

File:

PDF, 190 KB

english, 2000

28

Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b

Hiroyuki Tsuji, Nobuhiro Tsutsumi, Takuji Sasaki, Atsushi Hirai, Mikio Nakazono

Journal:

Year:

2003

Language:

english

File:

PDF, 739 KB

english, 2003

29

Biochemical and molecular characterization of rice ( O ryza sativa L.) roots forming a barrier to radial oxygen loss

KULICHIKHIN, KONSTANTIN, YAMAUCHI, TAKAKI, WATANABE, KOHTARO, NAKAZONO, MIKIO

Journal:

Plant, Cell & Environment

Year:

2014

Language:

english

File:

PDF, 1.23 MB

english, 2014

30

Identification of cDNA encoding cytochrome c oxidase subunit 5c (COX5c) from rice. Comparison of its expression with nuclear-encoded and mitochondrial-encoded COX genes.

Hamanaka, Sawako, Ohtsu, Kazuhiro, Kadowaki, Koh-ichi, Nakazono, Mikio, Hirai, Atsushi

Journal:

Genes & Genetic Systems

Year:

1999

Language:

english

File:

PDF, 171 KB

english, 1999

31

ATP synthesis inhibitors as well as respiratory inhibitors increase steady-state level of alternative oxidase mRNA in Arabidopsis thaliana

Daisuke Saisho, Mikio Nakazono, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Journal of Plant Physiology

Year:

2001

Language:

english

File:

PDF, 65 KB

english, 2001

32

Effects of organic acids on the formation of the barrier to radial oxygen loss in roots of Hordeum marinum

Kotula, Lukasz, Colmer, Timothy David, Nakazono, Mikio

Journal:

Functional Plant Biology

Year:

2014

Language:

english

File:

PDF, 3.15 MB

english, 2014

33

Arabidopsis ELONGATED MITOCHONDRIA1 Is Required for Localization of DYNAMIN-RELATED PROTEIN3A to Mitochondrial Fission Sites

Shin-ichi Arimura, Masaru Fujimoto, Yoko Doniwa, Naoki Kadoya, Mikio Nakazono, Wataru Sakamoto and Nobuhiro Tsutsumi

Journal:

Year:

2008

Language:

english

File:

PDF, 2.44 MB

english, 2008

34

RNA editing of transcripts of the gene for apocytochrome b(cob) in rice mitochondria.

Ito, Yusuke, Nakazono, Mikio, Kadowaki, Koh-ichi, Tsutsumi, Nobuhiro, Hirai, Atsushi

Journal:

Genes & Genetic Systems

Year:

1996

File:

PDF, 940 KB

1996

35

Regulation of root traits for internal aeration and tolerance to soil waterlogging-flooding stress

Yamauchi, Takaki, Colmer, Timothy D, Pedersen, Ole, Nakazono, Mikio

Journal:

PLANT PHYSIOLOGY

Year:

2017

Language:

english

File:

PDF, 2.33 MB

english, 2017

36

Root Cortex Provides a Venue for Gas-Space Formation and Is Essential for Plant Adaptation to Waterlogging

Yamauchi, Takaki, Abe, Fumitaka, Tsutsumi, Nobuhiro, Nakazono, Mikio

Journal:

Frontiers in Plant Science

Year:

2019

File:

PDF, 1.87 MB

2019

37

GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers

Hiroyuki Tsuji, Koichiro Aya, Miyako Ueguchi-Tanaka, Yukihisa Shimada, Mikio Nakazono, Ryosuke Watanabe, Naoko K. Nishizawa, Kenji Gomi, Asako Shimada, Hidemi Kitano, Motoyuki Ashikari, Makoto Matsuok

Journal:

The Plant Journal

Year:

2006

Language:

english

File:

PDF, 944 KB

english, 2006

38

The gene for alternative oxidase-2 (AOX2) from Arabidopsis thaliana consists of five exons unlike other AOX genes and is transcribed at an early stage during germination

Saisho, Daisuke, Nakazono, Mikio, Lee, Kwang-Hong, Tsutsumi, Nobuhiro, Akita, Shigemi, Hirai, Atsushi

Journal:

Genes & Genetic Systems

Year:

2001

Language:

english

File:

PDF, 1.62 MB

english, 2001

39

Characterization of two cDNA clones encoding isozymes of the F1F0-ATPase inhibitor protein of rice mitochondria

Mikio Nakazono, Takashi Imamura, Nobuhiro Tsutsumi, Takuji Sasaki, Atsushi Hirai

Journal:

Year:

2000

Language:

english

File:

PDF, 293 KB

english, 2000

40

Tissue-Specific Transcriptome Analysis in Nodules of Lotus japonicus

Takanashi, Kojiro, Takahashi, Hirokazu, Sakurai, Nozomu, Sugiyama, Akifumi, Suzuki, Hideyuki, Shibata, Daisuke, Nakazono, Mikio, Yazaki, Kazufumi

Journal:

Molecular Plant-Microbe Interactions

Year:

2012

Language:

english

File:

PDF, 578 KB

english, 2012

41

Screening of candidate genes associated with constitutive aerenchyma formation in adventitious roots of the teosinte Zea nicaraguensis

Abiko, Tomomi, Obara, Mitsuhiro, Abe, Fumitaka, Kawaguchi, Kentaro, Oyanagi, Atsushi, Yamauchi, Takaki, Nakazono, Mikio

Journal:

Year:

2012

Language:

english

File:

PDF, 580 KB

english, 2012

42

Lateral roots, in addition to the adventitious roots, form a barrier to radial oxygen loss in Zea nicaraguensis and a chromosome segment introgression line in maize

Pedersen, Ole, Nakayama, Yohei, Yasue, Hiroki, Kurokawa, Yusuke, Takahashi, Hirokazu, Heidi Floytrup, Anja, Omori, Fumie, Mano, Yoshiro, Colmer, Timothy David, Nakazono, Mikio

Journal:

New Phytologist

Year:

2020

Language:

english

File:

PDF, 1.10 MB

english, 2020

43

Palindromic repeated sequences (PRSs) in the mitochondrial genome of rice: evidence for their insertion after divergence of the genusOryzafrom the other Gramineae

Mikio Nakazono, Akira Kanno, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Plant Molecular Biology

Year:

1994

Language:

english

File:

PDF, 846 KB

english, 1994

44

Anaconda, a new class of transposon belonging to theMusuperfamily, has diversified by acquiring host genes during rice evolution

Kazuhiro Ohtsu, Hiro-Yuki Hirano, Nobuhiro Tsutsumi, Atsushi Hirai, Mikio Nakazono

Journal:

Molecular Genetics and Genomics

Year:

2005

Language:

english

File:

PDF, 1.14 MB

english, 2005

45

Six percent of the mitochondrial genome in rice came from chloroplast DNA

Atsushi Hirai, Mikio Nakazono

Journal:

Plant Molecular Biology Reporter

Year:

1993

Language:

english

File:

PDF, 324 KB

english, 1993

46

Rice Stomatal Closure Requires Guard Cell Plasma Membrane ATP-Binding Cassette Transporter RCN1/OsABCG5

Matsuda, Shuichi, Takano, Sho, Sato, Moeko, Furukawa, Kaoru, Nagasawa, Hidetaka, Yoshikawa, Shoko, Kasuga, Jun, Tokuji, Yoshihiko, Yazaki, Kazufumi, Nakazono, Mikio, Takamure, Itsuro, Kato, Kiyoaki

Journal:

Molecular Plant

Year:

2016

Language:

english

File:

PDF, 2.31 MB

english, 2016

47

Evolutionary variations in DNA sequences transferred from chloroplast genomes to mitochondrial genomes in the Gramineae

Natsu Watanabe, Mikio Nakazono, Akira Kanno, Nobuhiro Tsutsumi, Atsushi Hirai

Journal:

Current Genetics

Year:

1994

Language:

english

File:

PDF, 938 KB

english, 1994

48

cDNA microarray analysis of gene expression changes during pollination, pollen-tube elongation, fertilization, and early embryogenesis in rice pistils

Kaoru T. Yoshida, Makoto Endo, Mikio Nakazono, Hiroo Fukuda, Taku Demura, Tohru Tsuchiya, Masao Watanabe

Journal:

Plant Reproduction

Year:

2005

Language:

english

File:

PDF, 259 KB

english, 2005

49

Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+

Yasuhiro Ishimaru, Motofumi Suzuki, Takashi Tsukamoto, Kazumasa Suzuki, Mikio Nakazono, Takanori Kobayashi, Yasuaki Wada, Satoshi Watanabe, Shinpei Matsuhashi, Michiko Takahashi, Hiromi Nakanishi, Sat

Journal:

The Plant Journal

Year:

2006

Language:

english

File:

PDF, 651 KB

english, 2006

50

10.1271/kagakutoseibutsu.46.245

SHIONO, Katsuhiro, TAKAHASHI, Hirokazu, NAKAZONO, Mikio

Journal:

KAGAKU TO SEIBUTSU

Year:

2008

File:

PDF, 1.38 MB

2008

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